@inproceedings{ghosh-etal-2025-ladder,
  title = "{LADDER}: Language-Driven Slice Discovery and Error Rectification in Vision Classifiers",
  author = "Ghosh, Shantanu  and
    Syed, Rayan  and
    Wang, Chenyu  and
    Choudhary, Vaibhav  and
    Li, Binxu  and
    Poynton, Clare B  and
    Visweswaran, Shyam  and
    Batmanghelich, Kayhan",
  editor = "Che, Wanxiang  and
    Nabende, Joyce  and
    Shutova, Ekaterina  and
    Pilehvar, Mohammad Taher",
  booktitle = "Findings of the Association for Computational Linguistics: ACL 2025",
  month = jul,
  year = "2025",
  address = "Vienna, Austria",
  publisher = "Association for Computational Linguistics",
  url = "https://aclanthology.org/2025.findings-acl.1177/",
  pages = "22935--22970",
  ISBN = "979-8-89176-256-5"
}

@inproceedings{wang2025semantic,
  title={Semantic Consistency-Based Uncertainty Quantification for Factuality in Radiology Report Generation},
  author={Wang, Chenyu and Zhou, Weichao and Ghosh, Shantanu and Batmanghelich, Kayhan and Li, Wenchao},
  booktitle={Findings of the Association for Computational Linguistics: NAACL 2025},
  year={2025},
  url={https://arxiv.org/abs/2412.04606}
}

@inproceedings{morrison2025human,
  title={A Human-centered approach to identifying promises, risks, \& challenges of text-to-image generative AI in radiology},
  author={Morrison, Katelyn and Mathur, Arpit and Bradshaw, Aidan and Wartmann, Tom and Lundi, Steven and Zandifar, Afrooz and Dai, Weichang and Batmanghelich, Kayhan and Eslami, Motahhare and Perer, Adam},
  booktitle={Proceedings of the AAAI/ACM Conference on AI, Ethics, and Society},
  volume={8},
  number={2},
  pages={1758--1770},
  year={2025}
}

@article{chang2025high,
  title={High-dimensional causal mediation analysis by partial sum statistic and sample splitting strategy in imaging genetics application},
  author={Chang, Hung-Ching and Fang, Yusi and Gorczyca, Michael T and Batmanghelich, Kayhan and Tseng, George C},
  journal={Bioinformatics},
  volume={41},
  number={10},
  pages={btaf493},
  year={2025},
  publisher={Oxford University Press}
}

@article{taseh2025performance,
  title={Performance of Natural Language Processing versus International Classification of Diseases Codes in Building Registries for Patients With Fall Injury: Retrospective Analysis},
  author={Taseh, Atta and Sasanfar, Souri and Chan, Michelle and Sirls, Evan and Nazarian, Ara and Batmanghelich, Kayhan and Bean, Jonathan F and Ashkani-Esfahani, Soheil},
  journal={JMIR Medical Informatics},
  volume={13},
  number={1},
  pages={e66973},
  year={2025},
  publisher={JMIR Publications Inc., Toronto, Canada}
}

@inproceedings{sun2025multi,
  title={Multi-Modal Large Language Models are Effective Vision Learners},
  author={Sun, Li and Ahuja, Chaitanya and Chen, Peng and D'Zmura, Matt and Batmanghelich, Kayhan and Bontrager, Philip},
  booktitle={2025 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV)},
  pages={8617--8626},
  year={2025},
  organization={IEEE}
}

@article{xu2024medsyn,
  title={MedSyn: text-guided anatomy-aware synthesis of high-fidelity 3-D CT images},
  author={Xu, Yanwu and Sun, Li and Peng, Wei and Jia, Shuyue and Morrison, Katelyn and Perer, Adam and Zandifar, Afrooz and Visweswaran, Shyam and Eslami, Motahhare and Batmanghelich, Kayhan},
  journal={IEEE Transactions on Medical Imaging},
  volume={43},
  number={10},
  pages={3648--3660},
  year={2024},
  publisher={IEEE}
}

@inproceedings{ghosh2024mammo,
  title={Mammo-clip: A vision language foundation model to enhance data efficiency and robustness in mammography},
  author={Ghosh, Shantanu and Poynton, Clare B and Visweswaran, Shyam and Batmanghelich, Kayhan},
  booktitle={International conference on medical image computing and computer-assisted intervention},
  pages={632--642},
  year={2024},
  organization={Springer Nature Switzerland Cham}
}

@article{yu2024anatomy,
  title={Anatomy-specific Progression Classification in Chest Radiographs via Weakly Supervised Learning},
  author={Yu, Ke and Ghosh, Shantanu and Liu, Zhexiong and Deible, Christopher and Poynton, Clare B and Batmanghelich, Kayhan},
  journal={Radiology: Artificial Intelligence},
  volume={6},
  number={5},
  pages={e230277},
  year={2024},
  publisher={Radiological Society of North America}
}

@inproceedings{gong2023semi,
  title={Semi-implicit denoising diffusion models (siddms)},
  author={Gong, Mingming and Xie, Shaoan and Wei, Wei and Grundmann, Matthias and Batmanghelich, Kayhan and Hou, Tingbo and others},
  booktitle={Advances in Neural Information Processing Systems},
  volume={36},
  pages={17383--17394},
  year={2023}
}

@inproceedings{sun2021context,
  title={Context matters: Graph-based self-supervised representation learning for medical images},
  author={Sun, Li and Yu, Ke and Batmanghelich, Kayhan},
  booktitle={Proceedings of the AAAI Conference on Artificial Intelligence},
  volume={35},
  number={6},
  pages={4874--4882},
  year={2021}
}

@article{murali2023beyond,
  title={Beyond distribution shift: Spurious features through the lens of training dynamics},
  author={Murali, Nihal and Puli, Aahlad and Yu, Ke and Ranganath, Rajesh and Batmanghelich, Kayhan},
  journal={Transactions on machine learning research},
  volume={2023},
  pages={https--openreview},
  year={2023}
}

@article{reynolds2023combat,
  title={Combat harmonization: Empirical bayes versus fully bayes approaches},
  author={Reynolds, Maxwell and Chaudhary, Tigmanshu and Torbati, Mahbaneh Eshaghzadeh and Tudorascu, Dana L and Batmanghelich, Kayhan and Alzheimer's Disease Neuroimaging Initiative and others},
  journal={NeuroImage: Clinical},
  volume={39},
  pages={103472},
  year={2023},
  publisher={Elsevier}
}

@inproceedings{ghosh2023distilling,
  title={Distilling blackbox to interpretable models for efficient transfer learning},
  author={Ghosh, Shantanu and Yu, Ke and Batmanghelich, Kayhan},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={628--638},
  year={2023},
  organization={Springer Nature Switzerland Cham}
}

@inproceedings{ragoza2023physics,
  title={Physics-informed neural networks for tissue elasticity reconstruction in magnetic resonance elastography},
  author={Ragoza, Matthew and Batmanghelich, Kayhan},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={333--343},
  year={2023},
  organization={Springer Nature Switzerland Cham}
}

@article{chen2023deep,
  title={Deep learning integration of chest computed tomography imaging and gene expression identifies novel aspects of copd},
  author={Chen, Junxiang and Xu, Zhonghui and Sun, Li and Yu, Ke and Hersh, Craig P and Boueiz, Adel and Hokanson, John E and Sciurba, Frank C and Silverman, Edwin K and Castaldi, Peter J and others},
  journal={Chronic Obstructive Pulmonary Diseases: Journal of the COPD Foundation},
  volume={10},
  number={4},
  pages={355},
  year={2023}
}

@inproceedings{ghosh2023distilling,
  title={Distilling blackbox to interpretable models for efficient transfer learning},
  author={Ghosh, Shantanu and Yu, Ke and Batmanghelich, Kayhan},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={628--638},
  year={2023},
  organization={Springer Nature Switzerland Cham}
}

@inproceedings{singla2023augmentation,
  title={Augmentation by counterfactual explanation-fixing an overconfident classifier},
  author={Singla, Sumedha and Murali, Nihal and Arabshahi, Forough and Triantafyllou, Sofia and Batmanghelich, Kayhan},
  booktitle={Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision},
  pages={4720--4730},
  year={2023}
}

@article{singla2023explaining,
  title={Explaining the black-box smoothly—a counterfactual approach},
  author={Singla, Sumedha and Eslami, Motahhare and Pollack, Brian and Wallace, Stephen and Batmanghelich, Kayhan},
  journal={Medical Image Analysis},
  volume={84},
  pages={102721},
  year={2023},
  publisher={Elsevier}
}

@article{liu2022automated,
  title={Automated detection of premalignant oral lesions on whole slide images using convolutional neural networks},
  author={Liu, Yingci and Bilodeau, Elizabeth and Pollack, Brian and Batmanghelich, Kayhan},
  journal={Oral Oncology},
  volume={134},
  pages={106109},
  year={2022},
  publisher={Pergamon}
}

@inproceedings{yu2022anatomy,
  title={Anatomy-guided weakly-supervised abnormality localization in chest x-rays},
  author={Yu, Ke and Ghosh, Shantanu and Liu, Zhexiong and Deible, Christopher and Batmanghelich, Kayhan},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={658--668},
  year={2022},
  organization={Springer Nature Switzerland Cham}
}

@inproceedings{xu2022adversarial,
  title={Adversarial consistency for single domain generalization in medical image segmentation},
  author={Xu, Yanwu and Xie, Shaoan and Reynolds, Maxwell and Ragoza, Matthew and Gong, Mingming and Batmanghelich, Kayhan},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={671--681},
  year={2022},
  organization={Springer Nature Switzerland Cham}
}

@article{sun2022hierarchical,
  title={Hierarchical amortized GAN for 3D high resolution medical image synthesis},
  author={Sun, Li and Chen, Junxiang and Xu, Yanwu and Gong, Mingming and Yu, Ke and Batmanghelich, Kayhan},
  journal={IEEE journal of biomedical and health informatics},
  volume={26},
  number={8},
  pages={3966--3975},
  year={2022},
  publisher={IEEE}
}

@inproceedings{xu2022maximum,
  title={Maximum spatial perturbation consistency for unpaired image-to-image translation},
  author={Xu, Yanwu and Xie, Shaoan and Wu, Wenhao and Zhang, Kun and Gong, Mingming and Batmanghelich, Kayhan},
  booktitle={Proceedings of the IEEE/CVF conference on computer vision and pattern recognition},
  pages={18311--18320},
  year={2022}
}

@inproceedings{saeedi2022knowledge,
  title={Knowledge distillation via constrained variational inference},
  author={Saeedi, Ardavan and Utsumi, Yuria and Sun, Li and Batmanghelich, Kayhan and Lehman, Li-wei},
  booktitle={Proceedings of the AAAI Conference on Artificial Intelligence},
  volume={36},
  number={7},
  pages={8132--8140},
  year={2022}
}

@inproceedings{robinson2021can,
  title={Can contrastive learning avoid shortcut solutions?},
  author={Robinson, Joshua and Sun, Li and Yu, Ke and Batmanghelich, Kayhan and Jegelka, Stefanie and Sra, Suvrit},
  journal={Advances in neural information processing systems},
  volume={34},
  pages={4974--4986},
  year={2021}
}

@article{pollack2021deep,
  title={Deep learning prediction of voxel-level liver stiffness in patients with nonalcoholic fatty liver disease},
  author={Pollack, Brian L and Batmanghelich, Kayhan and Cai, Stephen S and Gordon, Emile and Wallace, Stephen and Catania, Roberta and Morillo-Hernandez, Carlos and Furlan, Alessandro and Borhani, Amir A},
  journal={Radiology: Artificial Intelligence},
  volume={3},
  number={6},
  pages={e200274},
  year={2021},
  publisher={Radiological Society of North America}
}

@inproceedings{jena2021self,
  title={Self-supervised vessel enhancement using flow-based consistencies},
  author={Jena, Rohit and Singla, Sumedha and Batmanghelich, Kayhan},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={242--251},
  year={2021},
  organization={Springer International Publishing Cham}
}

@inproceedings{singla2021using,
  title={Using causal analysis for conceptual deep learning explanation},
  author={Singla, Sumedha and Wallace, Stephen and Triantafillou, Sofia and Batmanghelich, Kayhan},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={519--528},
  year={2021},
  organization={Springer International Publishing Cham}
}

@article{singla2021improving,
  title={Improving clinical disease subtyping and future events prediction through a chest CT-based deep learning approach},
  author={Singla, Sumedha and Gong, Mingming and Riley, Craig and Sciurba, Frank and Batmanghelich, Kayhan},
  journal={Medical physics},
  volume={48},
  number={3},
  pages={1168--1181},
  year={2021}
}

@inproceedings{sun2021context,
  title={Context matters: Graph-based self-supervised representation learning for medical images},
  author={Sun, Li and Yu, Ke and Batmanghelich, Kayhan},
  booktitle={Proceedings of the AAAI Conference on Artificial Intelligence},
  volume={35},
  number={6},
  pages={4874--4882},
  year={2021}
}

@article{gong2019unpaired,
  title={Unpaired Data Empowers Association Tests},
  author={Gong, Mingming and Liu, Peng and Sciurba, Frank C and Stojanov, Petar and Tao, Dacheng and Tseng, George and Zhang, Kun and Batmanghelich, Kayhan},
  journal={Bioinformatics},
  pages={839159},
  year={2019},
  publisher={Cold Spring Harbor Laboratory}
}

@inproceedings{yu2020label,
  title={Label-noise robust domain adaptation},
  author={Yu, Xiyu and Liu, Tongliang and Gong, Mingming and Zhang, Kun and Batmanghelich, Kayhan and Tao, Dacheng},
  booktitle={International conference on machine learning},
  pages={10913--10924},
  year={2020},
  organization={PMLR}
}

@article{yu2020semi,
  title={Semi-supervised hierarchical drug embedding in hyperbolic space},
  author={Yu, Ke and Visweswaran, Shyam and Batmanghelich, Kayhan},
  journal={Journal of chemical information and modeling},
  volume={60},
  number={12},
  pages={5647--5657},
  year={2020},
  publisher={ACS Publications}
}

@article{xu20203d,
  title={3d-boxsup: Positive-unlabeled learning of brain tumor segmentation networks from 3d bounding boxes},
  author={Xu, Yanwu and Gong, Mingming and Chen, Junxiang and Chen, Ziye and Batmanghelich, Kayhan},
  journal={Frontiers in Neuroscience},
  volume={14},
  pages={350},
  year={2020},
  publisher={Frontiers Media SA}
}

@inproceedings{ravanbakhsh2020human,
  title={Human-machine collaboration for medical image segmentation},
  author={Ravanbakhsh, Mahdyar and Tschernezki, Vadim and Last, Felix and Klein, Tassilo and Batmanghelich, Kayhan and Tresp, Volker and Nabi, Moin},
  booktitle={ICASSP 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},
  pages={1040--1044},
  year={2020},
  organization={IEEE}
}

@inproceedings{singla2019explanation,
  title={Explanation by Progressive Exaggeration},
  author={Singla, Sumedha and Pollack, Brian and Chen, Junxiang and Batmanghelich, Kayhan},
  booktitle={International Conference on Learning Representations},
  year={2019}
}

@inproceedings{xu2020generative,
  title={Generative-discriminative complementary learning},
  author={Xu, Yanwu and Gong, Mingming and Chen, Junxiang and Liu, Tongliang and Zhang, Kun and Batmanghelich, Kayhan},
  booktitle={Proceedings of the AAAI conference on artificial intelligence},
  volume={34},
  number={04},
  pages={6526--6533},
  year={2020}
}

@inproceedings{chen2020weakly,
  title={Weakly supervised disentanglement by pairwise similarities},
  author={Chen, Junxiang and Batmanghelich, Kayhan},
  booktitle={Proceedings of the AAAI Conference on Artificial Intelligence},
  volume={34},
  number={04},
  pages={3495--3502},
  year={2020}
}

@inproceedings{fu2019geometry,
  title={Geometry-consistent generative adversarial networks for one-sided unsupervised domain mapping},
  author={Fu, Huan and Gong, Mingming and Wang, Chaohui and Batmanghelich, Kayhan and Zhang, Kun and Tao, Dacheng},
  booktitle={Proceedings of the IEEE/CVF conference on computer vision and pattern recognition},
  pages={2427--2436},
  year={2019}
}

@inproceedings{gong2019twin,
  title={Twin auxilary classifiers gan},
  author={Gong, Mingming and Xu, Yanwu and Li, Chunyuan and Zhang, Kun and Batmanghelich, Kayhan},
  booktitle={Advances in neural information processing systems},
  volume={32},
  year={2019}
}

@online{chen2019robust,
  author       = {Chen, Junxiang and Batmanghelich, Kayhan},
  title        = {Robust ordinal VAE: employing noisy pairwise comparisons for disentanglement},
  year         = {2019},
  eprint       = {1910.05898},
  eprinttype   = {arXiv},
  eprintclass   = {cs.LG},
  url          = {https://arxiv.org/abs/1910.05898},
  note         = {Preprint},
  keywords     = {preprint}
}

@inproceedings{singla2018subject2vec,
  title={Subject2Vec: generative-discriminative approach from a set of image patches to a vector},
  author={Singla, Sumedha and Gong, Mingming and Ravanbakhsh, Siamak and Sciurba, Frank and Poczos, Barnabas and Batmanghelich, Kayhan N},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={502--510},
  year={2018},
  organization={Springer International Publishing Cham}
}

@article{huisman2018structural,
  title={A structural equation model for imaging genetics using spatial transcriptomics},
  author={Huisman, Sjoerd MH and Mahfouz, Ahmed and Batmanghelich, Nematollah K and Lelieveldt, Boudewijn PF and Reinders, Marcel JT and Alzheimer's Disease Neuroimaging Initiative},
  journal={Brain informatics},
  volume={5},
  number={2},
  pages={13},
  year={2018},
  publisher={Springer Berlin Heidelberg Berlin/Heidelberg}
}

@online{gong2018causal,
  author       = {Gong, Mingming and Zhang, Kun and Huang, Biwei and Glymour, Clark and Tao, Dacheng and Batmanghelich, Kayhan},
  title        = {Causal generative domain adaptation networks},
  year         = {2018},
  eprint       = {1804.04333},
  eprinttype   = {arXiv},
  eprintclass   = {cs.LG},
  url          = {https://arxiv.org/abs/1804.04333},
  note         = {Preprint},
  keywords     = {preprint}
}

@online{salman2018deep,
  author       = {Salman, Hadi and Yadollahpour, Payman and Fletcher, Tom and Batmanghelich, Kayhan},
  title        = {Deep diffeomorphic normalizing flows},
  year         = {2018},
  eprint       = {1810.03256},
  eprinttype   = {arXiv},
  eprintclass   = {cs.LG},
  url          = {https://arxiv.org/abs/1810.03256},
  note         = {Preprint},
  keywords     = {preprint}
}

@inproceedings{yu2018efficient,
  title={An efficient and provable approach for mixture proportion estimation using linear independence assumption},
  author={Yu, Xiyu and Liu, Tongliang and Gong, Mingming and Batmanghelich, Kayhan and Tao, Dacheng},
  booktitle={Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition},
  pages={4480--4489},
  year={2018}
}

@inproceedings{fu2018deep,
  title={Deep ordinal regression network for monocular depth estimation},
  author={Fu, Huan and Gong, Mingming and Wang, Chaohui and Batmanghelich, Kayhan and Tao, Dacheng},
  booktitle={Proceedings of the IEEE conference on computer vision and pattern recognition},
  pages={2002--2011},
  year={2018}
}

@article{freifeld2017transformations,
  title={Transformations based on continuous piecewise-affine velocity fields},
  author={Freifeld, Oren and Hauberg, S{\o}ren and Batmanghelich, Kayhan and Fisher, Jonn W},
  journal={IEEE transactions on pattern analysis and machine intelligence},
  volume={39},
  number={12},
  pages={2496--2509},
  year={2017},
  publisher={IEEE}
}

@inproceedings{schabdach2017likelihood,
  title={A likelihood-free approach for characterizing heterogeneous diseases in large-scale studies},
  author={Schabdach, Jenna and Wells III, William M and Cho, Michael and Batmanghelich, Kayhan N},
  booktitle={International Conference on Information Processing in Medical Imaging},
  pages={170--183},
  year={2017},
  organization={Springer International Publishing Cham}
}

@inproceedings{binder2016unsupervised,
  title={Unsupervised discovery of emphysema subtypes in a large clinical cohort},
  author={Binder, Polina and Batmanghelich, Nematollah K and Estepar, Raul San Jose and Golland, Polina},
  booktitle={International Workshop on Machine Learning in Medical Imaging},
  pages={180--187},
  year={2016},
  keywords={workshop},
  organization={Springer International Publishing Cham}
}

@article{batmanghelich2016probabilistic,
  title={Probabilistic modeling of imaging, genetics and diagnosis},
  author={Batmanghelich, Nematollah K and Dalca, Adrian and Quon, Gerald and Sabuncu, Mert and Golland, Polina},
  journal={IEEE transactions on medical imaging},
  volume={35},
  number={7},
  pages={1765--1779},
  year={2016},
  publisher={IEEE}
}

@inproceedings{batmanghelich-etal-2016-nonparametric,
    title = "Nonparametric Spherical Topic Modeling with Word Embeddings",
    author = "Batmanghelich, Kayhan  and
      Saeedi, Ardavan  and
      Narasimhan, Karthik  and
      Gershman, Sam",
    editor = "Erk, Katrin  and
      Smith, Noah A.",
    booktitle = "Proceedings of the 54th Annual Meeting of the Association for Computational Linguistics (Volume 2: Short Papers)",
    month = aug,
    year = "2016",
    address = "Berlin, Germany",
    publisher = "Association for Computational Linguistics",
    url = "https://aclanthology.org/P16-2087/",
    doi = "10.18653/v1/P16-2087",
    pages = "537--542"
}

@inproceedings{batmanghelich2016inferring,
  title={Inferring Disease Status by Non-parametric Probabilistic Embedding},
  author={Batmanghelich, Nematollah Kayhan and Saeedi, Ardavan and Estepar, Raul San Jose and Cho, Michael and Wells III, William M},
  booktitle={Bayesian and grAphical Models for Biomedical Imaging},
  pages={49--57},
  year={2016},
  keywords={workshop},
  publisher={Springer International Publishing Cham}
}

@inproceedings{freifeld2015highly,
  title={Highly-expressive spaces of well-behaved transformations: Keeping it simple},
  author={Freifeld, Oren and Hauberg, Soren and Batmanghelich, Kayhan and Fisher, John W},
  booktitle={Proceedings of the IEEE International Conference on Computer Vision},
  pages={2911--2919},
  year={2015}
}

@inproceedings{batmanghelich2015generative,
  title={Generative method to discover genetically driven image biomarkers},
  author={Batmanghelich, Nematollah K and Saeedi, Ardavan and Cho, Michael and Estepar, Raul San Jose and Golland, Polina},
  booktitle={International Conference on Information Processing in Medical Imaging},
  pages={30--42},
  year={2015},
  organization={Springer International Publishing Cham}
}

@inproceedings{batmanghelich2014spherical,
  title={Spherical topic models for imaging phenotype discovery in genetic studies},
  author={Batmanghelich, Kayhan N and Cho, Michael and Jose, Raul San and Golland, Polina},
  booktitle={Bayesian and grAphical Models for Biomedical Imaging: First International Workshop, BAMBI 2014, Cambridge, MA, USA, September 18, 2014, Revised Selected Papers},
  pages={107--117},
  year={2014},
  keywords={workshop},
  organization={Springer International Publishing Cham}
}

@online{batmanghelich2014diversifying,
  author       = {Batmanghelich, Nematollah Kayhan and Quon, Gerald and Kulesza, Alex and Kellis, Manolis and Golland, Polina and Bornn, Luke},
  title        = {Diversifying sparsity using variational determinantal point processes},
  year         = {2014},
  eprint       = {1411.6307},
  eprinttype   = {arXiv},
  eprintclass   = {stat.ML},
  url          = {https://arxiv.org/abs/1411.6307},
  note         = {Preprint},
  keywords     = {preprint}
}

@inproceedings{wachinger2014brainprint,
  title={BrainPrint in the computer-aided diagnosis of Alzheimer's disease},
  author={Wachinger, Christian and Batmanghelich, K and Golland, Polina and Reuter, Martin},
  booktitle={Proceedings MICCAI workshop challenge on computer-aided diagnosis of dementia based on structural MRI data, Boston, MA, USA},
  keywords={workshop},
  year={2014}
}

@inproceedings{batmanghelich2013joint,
  title={Joint modeling of imaging and genetics},
  author={Batmanghelich, Nematollah K and Dalca, Adrian V and Sabuncu, Mert R and Golland, Polina},
  booktitle={International Conference on Information Processing in Medical Imaging},
  pages={766--777},
  year={2013},
  organization={Springer Berlin Heidelberg Berlin, Heidelberg}
}

@inproceedings{ghanbari2012dominant,
  title={Dominant component analysis of electrophysiological connectivity networks},
  author={Ghanbari, Yasser and Bloy, Luke and Batmanghelich, Kayhan and Roberts, Timothy PL and Verma, Ragini},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={231--238},
  year={2012},
  organization={Springer Berlin Heidelberg Berlin, Heidelberg}
}

@article{bloy2012integrated,
  title={An Integrated Framework for High Angular Resolution Diffusion Imaging--Based Investigation of Structural Connectivity},
  author={Bloy, Luke and Ingalhalikar, Madhura and Batmanghelich, Nematollah K and Schultz, Robert T and Roberts, Timothy PL and Verma, Ragini},
  journal={Brain connectivity},
  volume={2},
  number={2},
  pages={69--79},
  year={2012},
  publisher={Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA}
}

@article{batmanghelich2011generative,
  title={Generative-discriminative basis learning for medical imaging},
  author={Batmanghelich, Nematollah K and Taskar, Ben and Davatzikos, Christos},
  journal={IEEE transactions on medical imaging},
  volume={31},
  number={1},
  pages={51--69},
  year={2011},
  publisher={IEEE}
}

@inproceedings{batmanghelich2011regularized,
  title={Regularized tensor factorization for multi-modality medical image classification},
  author={Batmanghelich, Nematollah and Dong, Aoyan and Taskar, Ben and Davatzikos, Christos},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={17--24},
  year={2011},
  organization={Springer Berlin Heidelberg Berlin, Heidelberg}
}

@inproceedings{batmanghelich2011disease,
  title={Disease classification and prediction via semi-supervised dimensionality reduction},
  author={Batmanghelich, Kayhan N and Dong, H Ye and Pohl, Kilian M and Taskar, Ben and Davatzikos, Christos and others},
  booktitle={2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro},
  pages={1086--1090},
  year={2011},
  organization={IEEE}
}

@article{davatzikos2011prediction,
  title={Prediction of MCI to AD conversion, via MRI, CSF biomarkers, and pattern classification},
  author={Davatzikos, Christos and Bhatt, Priyanka and Shaw, Leslie M and Batmanghelich, Kayhan N and Trojanowski, John Q},
  journal={Neurobiology of aging},
  volume={32},
  number={12},
  pages={2322--e19},
  year={2011},
  publisher={Elsevier}
}

@inproceedings{batmanghelich2010application,
  title={Application of trace-norm and low-rank matrix decomposition for computational anatomy},
  author={Batmanghelich, Nematollah and Gooya, Ali and Kanterakis, Stathis and Taskar, Ben and Davatzikos, Christos},
  booktitle={2010 IEEE Computer Society Conference on Computer Vision and Pattern Recognition-Workshops},
  pages={146--153},
  year={2010},
  keywords={workshop},
  organization={IEEE}
}